OCA Atlas for 3DBH

3DBH

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, H, F, D
C, G, A, E
L, K, I, J

Primary reference

Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1., Souphron J, Waddell MB, Paydar A, Tokgoz-Gromley Z, Roussel MF, Schulman BA, Biochemistry. 2008 Jul 25. PMID:18652489

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (651 Kb) [Save to disk]

Biological Unit Coordinates (3dbh.pdb1.gz) 167 Kb

Biological Unit Coordinates (3dbh.pdb2.gz) 169 Kb

Biological Unit Coordinates (3dbh.pdb3.gz) 165 Kb

Biological Unit Coordinates (3dbh.pdb4.gz) 167 Kb

LPC: Ligand-Protein Contacts for 3DBH

CSU: Contacts of Structural Units for 3DBH

Likely Quarternary Molecular Structure file(s) for 3DBH

Structure Factors (976 Kb)

Retrieve 3DBH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DBH from S2C, [Save to disk]

Re-refined 3dbh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DBH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dbh_K] [3dbh_J] [3dbh_L] [3dbh] [3dbh_A] [3dbh_B] [3dbh_C] [3dbh_D] [3dbh_E] [3dbh_F] [3dbh_G] [3dbh_H] [3dbh_I]

SWISS-PROT database: [Q15843] [Q8TBC4] [Q13564]

Domains found in 3DBH: [E2_bind] [UBQ ] by SMART

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