3DCX Crystal structure of a duf1696 family protein with a pleckstrin-homology domain (shew_0819) from shewanella loihica pv-4 at 2.00 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CL, MPD, MSE enzyme
Gene SHEW ; YP
Primary referenceBacterial pleckstrin homology domains: a prokaryotic origin for the PH domain., Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, J Mol Biol. 2010 Feb 12;396(1):31-46. Epub 2009 Nov 10. PMID:19913036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3dcx.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 3DCX
  • CSU: Contacts of Structural Units for 3DCX
  • Likely Quarternary Molecular Structure file(s) for 3DCX
  • Structure Factors (6329 Kb)
  • Retrieve 3DCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DCX from S2C, [Save to disk]
  • Re-refined 3dcx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DCX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DCX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dcx_D] [3dcx_E] [3dcx_B] [3dcx] [3dcx_A] [3dcx_C]
  • SWISS-PROT database: [A3QB43]
  • Domain organization of [A3QB43_SHELP] by SWISSPFAM
    • Other resources with information on 3DCX
  • Community annotation for 3DCX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science