3DEN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, K, KGC, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMutating the tight-dimer interface of dihydrodipicolinate synthase disrupts the enzyme quaternary structure: toward a monomeric enzyme., Pearce FG, Dobson RC, Weber A, Lane LA, McCammon MG, Squire MA, Perugini MA, Jameson GB, Robinson CV, Gerrard JA, Biochemistry. 2008 Nov 18;47(46):12108-17. Epub 2008 Oct 21. PMID:18937497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3den.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 3DEN
  • CSU: Contacts of Structural Units for 3DEN
  • Likely Quarternary Molecular Structure file(s) for 3DEN
  • Structure Factors (704 Kb)
  • Retrieve 3DEN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DEN from S2C, [Save to disk]
  • Re-refined 3den structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DEN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3den] [3den_A] [3den_B]
  • SWISS-PROT database: [P0A6L2]
  • Domain found in 3DEN: [DHDPS ] by SMART

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