3DEX Structural Genomics, Unknown Function date Jun 10, 2008
title Crystal Structure Of Sav_2001 Protein From Streptomyces Aver Northeast Structural Genomics Consortium Target Svr107.
authors F.Forouhar, H.Neely, J.Seetharaman, H.Janjua, Y.Fang, R.Xiao, K.Cu L.C.Ma, L.A.Owen, C.X.Chen, T.B.Acton, G.T.Montelione, J.F.Hunt Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Sav_2001
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Organism_scientific: Streptomyces Avermitilis
Organism_taxid: 33903
Strain: Ma-4680
Gene: Sav2001, Sav_2001
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Pet21
Expression_system_plasmid: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.126 158.318 48.088 90.00 90.62 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene SAV
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3dex.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3dex.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (3dex.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (3dex.pdb4.gz) 28 Kb
  • CSU: Contacts of Structural Units for 3DEX
  • Likely Quarternary Molecular Structure file(s) for 3DEX
  • Structure Factors (606 Kb)
  • Retrieve 3DEX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DEX from S2C, [Save to disk]
  • Re-refined 3dex structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DEX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DEX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DEX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dex_E] [3dex] [3dex_H] [3dex_A] [3dex_B] [3dex_F] [3dex_G] [3dex_D] [3dex_C]
  • SWISS-PROT database: [Q82LK9]
  • Domain organization of [Q82LK9_STRAW] by SWISSPFAM
    • Other resources with information on 3DEX
  • Community annotation for 3DEX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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