3DGG Crystal structure of FabOX108 date
authors Ren, J., Nettleship, J.E., Owens, R.J., OPPF, Oxford.Protein.Production.Facility.
compound source
R_Free 0.24615
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MG enzyme
Primary referenceA pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells., Nettleship JE, Ren J, Rahman N, Berrow NS, Hatherley D, Neil Barclay A, Owens RJ, Protein Expr Purif. 2008 Jul 10. PMID:18662785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (3dgg.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (3dgg.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (3dgg.pdb3.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 3DGG
  • CSU: Contacts of Structural Units for 3DGG
  • Likely Quarternary Molecular Structure file(s) for 3DGG
  • Structure Factors (305 Kb)
  • Retrieve 3DGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DGG from S2C, [Save to disk]
  • Re-refined 3dgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DGG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DGG, from MSDmotif at EBI
  • Fold representative 3dgg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dgg] [3dgg_A] [3dgg_C] [3dgg_D] [3dgg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3DGG: [IG_like] [IGv ] by SMART
  • Other resources with information on 3DGG
  • Community annotation for 3DGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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