3DIF Crystal structure of FabOX117 date
authors Nettleship, J.E., Ren, J., Owens, R.J., OPPF, Oxford.Protein.Production.Facility.
compound source
R_Free 0.28632
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
Primary referenceA pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells., Nettleship JE, Ren J, Rahman N, Berrow NS, Hatherley D, Neil Barclay A, Owens RJ, Protein Expr Purif. 2008 Jul 10. PMID:18662785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3dif.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3dif.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 3DIF
  • Likely Quarternary Molecular Structure file(s) for 3DIF
  • Structure Factors (274 Kb)
  • Retrieve 3DIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIF from S2C, [Save to disk]
  • Re-refined 3dif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DIF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DIF, from MSDmotif at EBI
  • Fold representative 3dif from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dif_D] [3dif_C] [3dif_B] [3dif] [3dif_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3DIF: [IG_like] [IGv ] by SMART
  • Other resources with information on 3DIF
  • Community annotation for 3DIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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