3DKM	Ligase	date	Jun 25, 2008
title	Crystal Structure Of The Hectd1 Cph Domain
authors	J.R.Walker, L.Qiu, Y.Li, C.Bountra, M.Wolkstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics C (Sgc)
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Hectd1 Chain: A Fragment: Cph Domain, Unp Residues 1271-1343 Synonym: Hect Domain-Containing Protein 1, E3 Ligase For In Receptor, Eulir; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hectd1, Kiaa1131 Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 21 21 21	R_factor 0.156 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.710 45.564 51.101 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (3dkm.pdb1.gz) 28 Kb CSU: Contacts of Structural Units for 3DKM Likely Quarternary Molecular Structure file(s) for 3DKM Structure Factors (156 Kb) Retrieve 3DKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DKM from S2C, [Save to disk] Re-refined 3dkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DKM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DKM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dkm_A] [3dkm] SWISS-PROT database: [Q9ULT8] Domain organization of [HECD1_HUMAN] by SWISSPFAM

Other resources with information on 3DKM

Community annotation for 3DKM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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