3DLC Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.138
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.15
ligand ACT, GOL, MSE, SAM enzyme
note 3DLC is a representative structure
Gene NP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3dlc.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3DLC
  • CSU: Contacts of Structural Units for 3DLC
  • Likely Quarternary Molecular Structure file(s) for 3DLC
  • Structure Factors (6955 Kb)
  • Retrieve 3DLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLC from S2C, [Save to disk]
  • Re-refined 3dlc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DLC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dlc_A] [3dlc]
  • SWISS-PROT database: [Q6LY14]
  • Domain organization of [Q6LY14_METMP] by SWISSPFAM
  • Other resources with information on 3DLC
  • Community annotation for 3DLC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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