3DLH	Nucleic Acid Binding Protein Dna	date	Jun 27, 2008
title	Crystal Structure Of The Guide-Strand-Containing Argonaute P Silencing Complex
authors	Y.Wang, G.Sheng, D.J.Patel
compound		source
Molecule: Argonaute Chain: A, B Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 262724 Strain: Hb27 Gene: Tt_p0026 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Sumo
Molecule: Dna (5'- D(Dtpdgpdapdgpdgpdtpdapdgpdtpdapdgpdgpdtpdtpd Dtpdapdgpdt)-3'); Chain: X, Y Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.744 114.629 175.689 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	ACY, MG, PGE, PO4	enzyme
Gene	TT
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the guide-strand-containing argonaute silencing complex., Wang Y, Sheng G, Juranek S, Tuschl T, Patel DJ, Nature. 2008 Aug 27. PMID:18754009

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk] Biological Unit Coordinates (3dlh.pdb1.gz) 113 Kb Biological Unit Coordinates (3dlh.pdb2.gz) 109 Kb LPC: Ligand-Protein Contacts for 3DLH CSU: Contacts of Structural Units for 3DLH Likely Quarternary Molecular Structure file(s) for 3DLH Structure Factors (372 Kb) Retrieve 3DLH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DLH from S2C, [Save to disk] Re-refined 3dlh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DLH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DLH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DLH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dlh_B] [3dlh_X] [3dlh_Y] [3dlh] [3dlh_A] SWISS-PROT database: [Q746M7] Domain organization of [Q746M7_THET2] by SWISSPFAM Domain found in 3DLH: [Piwi ] by SMART

Other resources with information on 3DLH

Community annotation for 3DLH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---