3DLH Crystal structure of the guide-strand-containing Argonaute protein silencing complex date
authors Wang, Y., Sheng, G., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand ACY, MG, PGE, PO4 enzyme
Gene TT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the guide-strand-containing argonaute silencing complex., Wang Y, Sheng G, Juranek S, Tuschl T, Patel DJ, Nature. 2008 Aug 27. PMID:18754009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (3dlh.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3dlh.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3DLH
  • CSU: Contacts of Structural Units for 3DLH
  • Likely Quarternary Molecular Structure file(s) for 3DLH
  • Structure Factors (372 Kb)
  • Retrieve 3DLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLH from S2C, [Save to disk]
  • Re-refined 3dlh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DLH, from MSDmotif at EBI
  • Fold representative 3dlh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dlh_B] [3dlh_X] [3dlh_Y] [3dlh] [3dlh_A]
  • SWISS-PROT database: [Q746M7]
  • Domain organization of [Q746M7_THET2] by SWISSPFAM
  • Domain found in 3DLH: [Piwi ] by SMART
  • Other resources with information on 3DLH
  • Community annotation for 3DLH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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