3DLK Transferase date Jun 27, 2008
title Crystal Structure Of An Engineered Form Of The Hiv-1 Reverse Transcriptase, Rt69a
authors W.C.Ho, J.D.Bauman, D.M.Himmel, K.Das, E.Arnold
compound source
Molecule: Reverse Transcriptaseribonuclease H
Chain: A
Fragment: P66 (Unp Residues 599 To 1153)
Synonym: P66 Rt
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 Bh
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: P51 Rt
Chain: B
Fragment: P51 (Unp Residues 605 To 1027)
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11678
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.237 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
164.010 72.040 109.330 90.00 104.38 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand SO4 enzyme Transferase E.C. BRENDA


Primary referenceCrystal engineering of HIV-1 reverse transcriptase for structure-based drug design., Bauman JD, Das K, Ho WC, Baweja M, Himmel DM, Clark AD Jr, Oren DA, Boyer PL, Hughes SH, Shatkin AJ, Arnold E, Nucleic Acids Res. 2008 Sep;36(15):5083-92. Epub 2008 Aug 1. PMID:18676450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (3dlk.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3DLK
  • CSU: Contacts of Structural Units for 3DLK
  • Likely Quarternary Molecular Structure file(s) for 3DLK
  • Structure Factors (846 Kb)
  • Retrieve 3DLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLK from S2C, [Save to disk]
  • Re-refined 3dlk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DLK, from MSDmotif at EBI
  • Fold representative 3dlk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dlk_A] [3dlk] [3dlk_B]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Other resources with information on 3DLK
  • Community annotation for 3DLK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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