3DMD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A, C


Primary referenceStructures of the signal recognition particle receptor from the archaeon Pyrococcus furiosus: implications for the targeting step at the membrane., Egea PF, Tsuruta H, de Leon GP, Napetschnig J, Walter P, Stroud RM, PLoS ONE. 2008;3(11):e3619. Epub 2008 Nov 3. PMID:18978942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (3dmd.pdb1.gz) 316 Kb
  • Biological Unit Coordinates (3dmd.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (3dmd.pdb3.gz) 54 Kb
  • Biological Unit Coordinates (3dmd.pdb4.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3DMD
  • CSU: Contacts of Structural Units for 3DMD
  • Likely Quarternary Molecular Structure file(s) for 3DMD
  • Structure Factors (521 Kb)
  • Retrieve 3DMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DMD from S2C, [Save to disk]
  • Re-refined 3dmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dmd] [3dmd_A] [3dmd_B] [3dmd_C]
  • SWISS-PROT database: [Q8U051]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domains found in 3DMD: [AAA] [SRP54] [SRP54_N ] by SMART

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