3DMI		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HEC, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution., Akazaki H, Kawai F, Hosokawa M, Hama T, Chida H, Hirano T, Lim BK, Sakurai N, Hakamata W, Park SY, Nishio T, Oku T, Biosci Biotechnol Biochem. 2009 Jan;73(1):189-91. Epub 2009 Jan 7. PMID:19129656

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk] Biological Unit Coordinates (3dmi.pdb1.gz) 16 Kb LPC: Ligand-Protein Contacts for 3DMI CSU: Contacts of Structural Units for 3DMI Likely Quarternary Molecular Structure file(s) for 3DMI Structure Factors (224 Kb) Retrieve 3DMI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DMI from S2C, [Save to disk] Re-refined 3dmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DMI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dmi] [3dmi_A] SWISS-PROT database: [Q8GTB5]

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