3DNH Structural Genomics, Unknown Function date Jul 02, 2008
title The Crystal Structure Of The Protein Atu2129 (Unknown Functi Agrobacterium Tumefaciens Str. C58
authors K.Tan, X.Xu, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak, Midwes For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein Atu2129
Chain: A, B
Engineered: Yes
 Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 176299
Strain: Str. C58
Gene: Agr_c_3862, Atu2129
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv Lic
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.651 66.830 69.967 90.00 108.19 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand MSE enzyme
Gene AGR (C. caroliniana)
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3dnh.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3DNH
  • CSU: Contacts of Structural Units for 3DNH
  • Likely Quarternary Molecular Structure file(s) for 3DNH
  • Structure Factors (503 Kb)
  • Retrieve 3DNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DNH from S2C, [Save to disk]
  • Re-refined 3dnh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DNH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DNH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dnh_A] [3dnh_B] [3dnh]
  • SWISS-PROT database: [A9CI98]
  • Domain organization of [A9CI98_AGRT5] by SWISSPFAM
    • Other resources with information on 3DNH
  • Community annotation for 3DNH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science