3DNL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component C, F, B, I, D, E, H, G, A
Primary reference	Molecular architecture of native HIV-1 gp120 trimers., Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S, Nature. 2008 Jul 30. PMID:18668044

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (3dnl.pdb1.gz) 134 Kb CSU: Contacts of Structural Units for 3DNL Likely Quarternary Molecular Structure file(s) for 3DNL Retrieve 3DNL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DNL from S2C, [Save to disk]

View 3DNL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dnl] [3dnl_A] [3dnl_B] [3dnl_C] [3dnl_D] [3dnl_E] [3dnl_F] [3dnl_G] [3dnl_H] [3dnl_I] SWISS-PROT database: [P04578] Belongs to the human immunodeficiency virus type 1 (hiv-1) fusion peptide (hiv-fp) family according to TCDB.

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