3DO9 Structural Genomics, Unknown Function date Jul 03, 2008
title Crystal Structure Of Protein Ba1542 From Bacillus Anthracis
authors Y.Patskovsky, S.Ozyurt, J.Freeman, M.Iizuka, M.Maletic, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Upf0302 Protein Ba_1542gbaa1542bas1430
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Bacillus Anthracis
Organism_common: Anthrax,Anthrax Bacterium
Organism_taxid: 1392
Gene: Ba_1542, Gbaa1542, Bas1430
symmetry Space Group: P 65 2 2
R_factor 0.264 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.742 127.742 196.068 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
Gene BA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3do9.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3do9.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (3do9.pdb3.gz) 29 Kb
  • CSU: Contacts of Structural Units for 3DO9
  • Likely Quarternary Molecular Structure file(s) for 3DO9
  • Structure Factors (581 Kb)
  • Retrieve 3DO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DO9 from S2C, [Save to disk]
  • Re-refined 3do9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DO9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DO9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3do9_C] [3do9_B] [3do9] [3do9_A]
  • SWISS-PROT database: [Q81SV3]
  • Domain organization of [Y1542_BACAN] by SWISSPFAM
  • Domain found in 3DO9: [IDEAL ] by SMART
    • Other resources with information on 3DO9
  • Community annotation for 3DO9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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