3DOA Protein Binding date Jul 03, 2008
title The Crystal Structure Of The Fibrinogen Binding Protein From Staphylococcus Aureus
authors R.Zhang, R.Wu, L.Freeman, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Fibrinogen Binding Protein
Chain: A
Fragment: Residues 1-288
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus Mu
Organism_taxid: 158878
Strain: Ubsp. Aureus Mu50
Gene: Sav1208
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: I 41 2 2
R_factor 0.187 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.269 102.269 166.911 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3doa.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 3DOA
  • Likely Quarternary Molecular Structure file(s) for 3DOA
  • Structure Factors (88 Kb)
  • Retrieve 3DOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DOA from S2C, [Save to disk]
  • Re-refined 3doa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DOA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DOA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3doa] [3doa_A]
  • SWISS-PROT database: [Q99UR0]
  • Domain organization of [Q99UR0_STAAM] by SWISSPFAM
    • Other resources with information on 3DOA
  • Community annotation for 3DOA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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