3DP1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2RB, BEN, CL BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, E, D, C, F


Primary referenceDiscovering potent inhibitors against the beta-hydroxyacyl-acyl carrier protein dehydratase (FabZ) of Helicobacter pylori: structure-based design, synthesis, bioassay, and crystal structure determination., He L, Zhang L, Liu X, Li X, Zheng M, Li H, Yu K, Chen K, Shen X, Jiang H, Liu H, J Med Chem. 2009 Apr 23;52(8):2465-81. PMID:19309082
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3dp1.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3DP1
  • CSU: Contacts of Structural Units for 3DP1
  • Likely Quarternary Molecular Structure file(s) for 3DP1
  • Structure Factors (3051 Kb)
  • Retrieve 3DP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DP1 from S2C, [Save to disk]
  • Re-refined 3dp1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dp1] [3dp1_A] [3dp1_B] [3dp1_C] [3dp1_D] [3dp1_E] [3dp1_F]
  • SWISS-PROT database: [Q5G940]

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