3DPL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ZN	enzyme
note	3DPL is a representative structure
Gene Ontology	Chain Function Process Component C R
Primary reference	Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation., Duda DM, Borg LA, Scott DC, Hunt HW, Hammel M, Schulman BA, Cell. 2008 Sep 19;134(6):995-1006. PMID:18805092

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (3dpl.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 3DPL CSU: Contacts of Structural Units for 3DPL Likely Quarternary Molecular Structure file(s) for 3DPL Structure Factors (138 Kb) Retrieve 3DPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DPL from S2C, [Save to disk] Re-refined 3dpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DPL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dpl] [3dpl_C] [3dpl_R] SWISS-PROT database: [Q93034] [P62877] Domains found in 3DPL: [CULLIN] [Cullin_Nedd8] [RING ] by SMART

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