3DT1 Transferase date Jul 14, 2008
title P38 Complexed With A Quinazoline Inhibitor
authors B.Herberich, R.Syed, V.Li, A.S.Tasker
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.664 86.056 119.345 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand P40 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Highly Selective and Potent p38 Inhibitors Based on a Phthalazine Scaffold., Herberich B, Cao GQ, Chakrabarti PP, Falsey JR, Pettus L, Rzasa RM, Reed AB, Reichelt A, Sham K, Thaman M, Wurz RP, Xu S, Zhang D, Hsieh F, Lee MR, Syed R, Li V, Grosfeld D, Plant MH, Henkle B, Sherman L, Middleton S, Wong LM, Tasker AS, J Med Chem. 2008 Sep 26. PMID:18817365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3dt1.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3DT1
  • CSU: Contacts of Structural Units for 3DT1
  • Likely Quarternary Molecular Structure file(s) for 3DT1
  • Structure Factors (84 Kb)
  • Retrieve 3DT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DT1 from S2C, [Save to disk]
  • Re-refined 3dt1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DT1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DT1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dt1_A] [3dt1]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3DT1: [S_TKc ] by SMART
  • Other resources with information on 3DT1
  • Community annotation for 3DT1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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