3DVG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceUbiquitin chain editing revealed by polyubiquitin linkage-specific antibodies., Newton K, Matsumoto ML, Wertz IE, Kirkpatrick DS, Lill JR, Tan J, Dugger D, Gordon N, Sidhu SS, Fellouse FA, Komuves L, French DM, Ferrando RE, Lam C, Compaan D, Yu C, Bosanac I, Hymowitz SG, Kelley RF, Dixit VM, Cell. 2008 Aug 22;134(4):668-78. PMID:18724939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3dvg.pdb1.gz) 90 Kb
  • CSU: Contacts of Structural Units for 3DVG
  • Likely Quarternary Molecular Structure file(s) for 3DVG
  • Structure Factors (364 Kb)
  • Retrieve 3DVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DVG from S2C, [Save to disk]
  • Re-refined 3dvg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dvg] [3dvg_A] [3dvg_B] [3dvg_X] [3dvg_Y]
  • SWISS-PROT database: [P01857] [P01834] [Q6PIL8] [P62988]
  • Domains found in 3DVG: [IG_like] [IGv] [UBQ ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science