3DVN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceUbiquitin chain editing revealed by polyubiquitin linkage-specific antibodies., Newton K, Matsumoto ML, Wertz IE, Kirkpatrick DS, Lill JR, Tan J, Dugger D, Gordon N, Sidhu SS, Fellouse FA, Komuves L, French DM, Ferrando RE, Lam C, Compaan D, Yu C, Bosanac I, Hymowitz SG, Kelley RF, Dixit VM, Cell. 2008 Aug 22;134(4):668-78. PMID:18724939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3dvn.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (3dvn.pdb2.gz) 91 Kb
  • CSU: Contacts of Structural Units for 3DVN
  • Likely Quarternary Molecular Structure file(s) for 3DVN
  • Structure Factors (642 Kb)
  • Retrieve 3DVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DVN from S2C, [Save to disk]
  • Re-refined 3dvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dvn] [3dvn_A] [3dvn_B] [3dvn_H] [3dvn_L] [3dvn_U] [3dvn_V] [3dvn_X] [3dvn_Y]
  • SWISS-PROT database: [P01857] [P01834] [Q6PIL8] [P62988]
  • Domains found in 3DVN: [IG_like] [IGv] [UBQ ] by SMART

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