3DXD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, C


B, D


Primary referenceStructure of the intracellular domain of the amyloid precursor protein in complex with Fe65-PTB2., Radzimanowski J, Simon B, Sattler M, Beyreuther K, Sinning I, Wild K, EMBO Rep. 2008 Nov;9(11):1134-40. Epub 2008 Oct 3. PMID:18833287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3dxd.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (3dxd.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 3DXD
  • Likely Quarternary Molecular Structure file(s) for 3DXD
  • Structure Factors (425 Kb)
  • Retrieve 3DXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DXD from S2C, [Save to disk]
  • Re-refined 3dxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dxd] [3dxd_A] [3dxd_B] [3dxd_C] [3dxd_D]
  • SWISS-PROT database: [P05067] [O00213]
  • Belongs to the amyloid β-protein peptide (aβpp) family according to TCDB.
  • Domain found in 3DXD: [PTB ] by SMART

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