3DY4		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SLA	enzyme
Gene Ontology	Chain Function Process Component A, O proteasome core complex, alp... B, P proteasome core complex, alp... C, Q E, S proteasome core complex, alp... F, T G, U proteasome core complex, alp... J, X endopeptidase activator acti... proteasome core complex, bet... L, Z M, 1 N, 2 proteasome core complex, bet... R, D proteasome core complex, alp... W, I endopeptidase activator acti... proteasome core complex, bet... Y, V, K, H
Primary reference	Structural Analysis of Spiro beta-Lactone Proteasome Inhibitors., Groll M, Balskus EP, Jacobsen EN, J Am Chem Soc. 2008 Oct 17. PMID:18928262

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1005 Kb) [Save to disk] Biological Unit Coordinates (3dy4.pdb1.gz) 999 Kb LPC: Ligand-Protein Contacts for 3DY4 CSU: Contacts of Structural Units for 3DY4 Likely Quarternary Molecular Structure file(s) for 3DY4 Structure Factors (6974 Kb) Retrieve 3DY4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DY4 from S2C, [Save to disk] Re-refined 3dy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DY4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dy4] [3dy4_1] [3dy4_2] [3dy4_A] [3dy4_B] [3dy4_C] [3dy4_D] [3dy4_E] [3dy4_F] [3dy4_G] [3dy4_H] [3dy4_I] [3dy4_J] [3dy4_K] [3dy4_L] [3dy4_M] [3dy4_N] [3dy4_O] [3dy4_P] [3dy4_Q] [3dy4_R] [3dy4_S] [3dy4_T] [3dy4_U] [3dy4_V] [3dy4_W] [3dy4_X] [3dy4_Y] [3dy4_Z] SWISS-PROT database: [P40302] [P23639] [P21242] [P23638] [P32379] [P21243] [P40303] [P23724] [P22141] [P25451] [P30657] [P30656] [P38624] [P25043] Domain found in 3DY4: [Proteasome_A_N ] by SMART

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