3DZQ Transferase date Jul 30, 2008
title Human Epha3 Kinase Domain In Complex With Inhibitor Awl-II-3
authors J.R.Walker, F.Syeda, N.Gray, W.Mansoor, F.Mackenzie, C.Bountra, J. C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Eph Receptor A3
Chain: A
Fragment: Kinase Domain: Residues 606-947
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Tissue: Placenta
Gene: Epha3
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28-Lic-Thrombin
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.400 38.093 75.983 90.00 101.75 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand IFC enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3dzq.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3DZQ
  • CSU: Contacts of Structural Units for 3DZQ
  • Likely Quarternary Molecular Structure file(s) for 3DZQ
  • Structure Factors (516 Kb)
  • Retrieve 3DZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DZQ from S2C, [Save to disk]
  • Re-refined 3dzq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DZQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DZQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dzq] [3dzq_A]
  • SWISS-PROT database: [P29320]
  • Domain organization of [EPHA3_HUMAN] by SWISSPFAM
  • Domain found in 3DZQ: [TyrKc ] by SMART
    • Other resources with information on 3DZQ
  • Community annotation for 3DZQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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