3E88 Transferase date Aug 19, 2008
title Crystal Structures Of The Kinase Domain Of Akt2 In Complex W Competitive Inhibitors
authors N.O.Concha, P.A.Elkins, A.Smallwood, P.Ward
compound source
Molecule: Rac-Beta Serinethreonine-Protein Kinase
Chain: A, B
Fragment: Akt2 Kinase Domain (146-480)
Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase Pkb Beta;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Glycogen Synthase Kinase-3 Beta Peptide
Chain: C, D
Synonym: Gsk-3 Beta
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. It I Naturally In Human.
symmetry Space Group: P 32
R_factor 0.230 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.885 116.885 45.115 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand G96, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAminofurazans as potent inhibitors of AKT kinase., Rouse MB, Seefeld MA, Leber JD, McNulty KC, Sun L, Miller WH, Zhang S, Minthorn EA, Concha NO, Choudhry AE, Schaber MD, Heerding DA, Bioorg Med Chem Lett. 2009 Mar 1;19(5):1508-11. Epub 2009 Jan 9. PMID:19179070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (3e88.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3e88.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3E88
  • CSU: Contacts of Structural Units for 3E88
  • Likely Quarternary Molecular Structure file(s) for 3E88
  • Structure Factors (360 Kb)
  • Retrieve 3E88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E88 from S2C, [Save to disk]
  • Re-refined 3e88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E88
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E88, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e88] [3e88_C] [3e88_D] [3e88_A] [3e88_B]
  • SWISS-PROT database: [P31751] [P49841]
  • Domain organization of [AKT2_HUMAN] [GSK3B_HUMAN] by SWISSPFAM
  • Domains found in 3E88: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3E88
  • Community annotation for 3E88 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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