3E8O Oxidoreductase date Aug 20, 2008
title Crystal Structure Of A Putative Antibiotic Biosynthesis Mono (Dr_2100) From Deinococcus Radiodurans At 1.40 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Uncharacterized Protein With Ferredoxin-Like Fold
Chain: A, B
Engineered: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Gene: Np_295823.1, Dr_2100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 1 21 1
R_factor 0.128 R_Free 0.163
length a length b length c angle alpha angle beta angle gamma
33.715 59.639 47.511 90.00 97.18 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand EDO, MSE, UNL enzyme
note 3E8O is a representative structure
Gene DR ; NP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3e8o.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3E8O
  • CSU: Contacts of Structural Units for 3E8O
  • Likely Quarternary Molecular Structure file(s) for 3E8O
  • Structure Factors (3385 Kb)
  • Retrieve 3E8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E8O from S2C, [Save to disk]
  • Re-refined 3e8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E8O, from MSDmotif at EBI
  • Fold representative 3e8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e8o_B] [3e8o_A] [3e8o]
  • SWISS-PROT database: [Q9RSM4]
  • Domain organization of [Q9RSM4_DEIRA] by SWISSPFAM
  • Other resources with information on 3E8O
  • Community annotation for 3E8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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