3EG6	Protein Binding	date	Sep 10, 2008
title	Structure Of Wdr5 Bound To Mll1 Peptide
authors	A.Patel, V.Dharmarajan, M.S.Cosgrove
compound		source
Molecule: Wd Repeat-Containing Protein 5 Chain: A Fragment: Wd-Repeat Domain (Unp Residues 23-334) Synonym: Bmp2-Induced 3-Kb Gene Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr5, Big3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta II Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcgs7
Molecule: Mll-1 Peptide Chain: C Fragment: Mll-1 Win Motif Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Can Be Naturally Found In Homo Sapiens (Human).
symmetry	Space Group: C 2 2 21	R_factor 0.203 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.254 98.384 80.075 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	ACE, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of WDR5 bound to mixed lineage leukemia protein-1 peptide., Patel A, Dharmarajan V, Cosgrove MS, J Biol Chem. 2008 Nov 21;283(47):32158-61. Epub 2008 Oct 1. PMID:18829459

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (3eg6.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 3EG6 CSU: Contacts of Structural Units for 3EG6 Likely Quarternary Molecular Structure file(s) for 3EG6 Structure Factors (258 Kb) Retrieve 3EG6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EG6 from S2C, [Save to disk] Re-refined 3eg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EG6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EG6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EG6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eg6_A] [3eg6_C] [3eg6] SWISS-PROT database: [Q03164] [P61964] Domain organization of [MLL1_HUMAN] [WDR5_HUMAN] by SWISSPFAM Domain found in 3EG6: [WD40 ] by SMART

Other resources with information on 3EG6

Community annotation for 3EG6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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