3EKM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZDR enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, F, C, B, A, D


Primary referenceCrystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis., Pillai B, Moorthie VA, van Belkum MJ, Marcus SL, Cherney MM, Diaper CM, Vederas JC, James MN, J Mol Biol. 2009 Jan 16;385(2):580-94. Epub 2008 Nov 5. PMID:19013471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (3ekm.pdb1.gz) 283 Kb
  • Biological Unit Coordinates (3ekm.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (3ekm.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (3ekm.pdb4.gz) 51 Kb
  • Biological Unit Coordinates (3ekm.pdb5.gz) 52 Kb
  • Biological Unit Coordinates (3ekm.pdb6.gz) 51 Kb
  • Biological Unit Coordinates (3ekm.pdb7.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3EKM
  • CSU: Contacts of Structural Units for 3EKM
  • Likely Quarternary Molecular Structure file(s) for 3EKM
  • Structure Factors (623 Kb)
  • Retrieve 3EKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EKM from S2C, [Save to disk]
  • Re-refined 3ekm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ekm] [3ekm_A] [3ekm_B] [3ekm_C] [3ekm_D] [3ekm_E] [3ekm_F]
  • SWISS-PROT database: [Q9LFG2]

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science