3EKN Transferase date Sep 19, 2008
title Insulin Receptor Kinase Complexed With An Inhibitor
authors S.Chamberlain, C.Atkins, F.Deanda, M.Dumble, R.Gerding, A.Groy, S.Korenchuk, R.Kumar, H.Lei, R.Mook, G.Moorthy, A.Redman, J.Rowla L.Shewchuk
compound source
Molecule: Insulin Receptor
Chain: A
Fragment: Kinase Domain
Synonym: Ir, Insulin Receptor Subunit Alpha, Insulin Recept Beta;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Insr
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.092 69.522 89.961 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GS3 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidine IGF-1R tyrosine kinase inhibitors towards JNK selectivity., Chamberlain SD, Redman AM, Wilson JW, Deanda F, Shotwell JB, Gerding R, Lei H, Yang B, Stevens KL, Hassell AM, Shewchuk LM, Leesnitzer MA, Smith JL, Sabbatini P, Atkins C, Groy A, Rowand JL, Kumar R, Mook RA Jr, Moorthy G, Patnaik S, Bioorg Med Chem Lett. 2009 Jan 15;19(2):360-4. Epub 2008 Nov 24. PMID:19071018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3ekn.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3EKN
  • CSU: Contacts of Structural Units for 3EKN
  • Likely Quarternary Molecular Structure file(s) for 3EKN
  • Structure Factors (272 Kb)
  • Retrieve 3EKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EKN from S2C, [Save to disk]
  • Re-refined 3ekn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EKN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EKN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ekn] [3ekn_A]
  • SWISS-PROT database: [P06213]
  • Domain organization of [INSR_HUMAN] by SWISSPFAM
  • Domain found in 3EKN: [TyrKc ] by SMART
  • Other resources with information on 3EKN
  • Community annotation for 3EKN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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