3EQ3 Ribosomal Protein Rna date Sep 30, 2008
title Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated S Revealed By Cryo-Em
authors J.Frank, W.Li, X.Agirrezabala
compound source
Molecule: Elongation Factor Tu
Chain: X
Synonym: Ef-Tu, P-43
 Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S12
Chain: L
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: 50s Ribosomal Protein L11
Chain: I
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Trna
Chain: Y
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Fragment H18 Of The 16s Rrna
Chain: A
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Fragment H44 Of The 16s Rrna
Chain: C
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Fragment H43-44 Of The 23s Rrna
Chain: B
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Fragment H95 Of The 23s Rrna
Chain: D
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333

Molecule: Fragment H69 Of The 23s Rrna
Chain: E
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
Gene
Ontology
ChainFunctionProcessComponent
I


L


X


Primary referenceRecognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM., Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J, EMBO J. 2008 Nov 20. PMID:19020518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (3eq3.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 3EQ3
  • Retrieve 3EQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EQ3 from S2C, [Save to disk]
    • View 3EQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EQ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EQ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eq3] [3eq3_I] [3eq3_L] [3eq3_A] [3eq3_B] [3eq3_E] [3eq3_C] [3eq3_Y] [3eq3_X] [3eq3_D]
  • SWISS-PROT database: [P0CE48] [P0A7J7] [P0A7S3]
  • Domain organization of [EFTU2_ECOLI] [RL11_ECOLI] [RS12_ECOLI] by SWISSPFAM
  • Domain found in 3EQ3: [RL11 ] by SMART
    • Other resources with information on 3EQ3
  • Community annotation for 3EQ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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