3EWH	Transferase	date	Oct 15, 2008
title	Crystal Structure Of The Vegfr2 Kinase Domain In Complex Wit Pyridyl-Pyrimidine Benzimidazole Inhibitor
authors	D.A.Whittington, A.M.Long, P.Rose, Y.Gu, H.Zhao
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Unp Residues 815-939, 990-1171 Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1, Cd309 Antigen; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Kdr, Flk1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.206 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.319 84.380 47.404 90.00 99.33 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	EDO, K11 BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Pyridyl-pyrimidine benzimidazole derivatives as potent, selective, and orally bioavailable inhibitors of Tie-2 kinase., Cee VJ, Cheng AC, Romero K, Bellon S, Mohr C, Whittington DA, Bak A, Bready J, Caenepeel S, Coxon A, Deak HL, Fretland J, Gu Y, Hodous BL, Huang X, Kim JL, Lin J, Long AM, Nguyen H, Olivieri PR, Patel VF, Wang L, Zhou Y, Hughes P, Geuns-Meyer S, Bioorg Med Chem Lett. 2008 Nov 20. PMID:19062275

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (3ewh.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 3EWH CSU: Contacts of Structural Units for 3EWH Structure Factors (514 Kb) Retrieve 3EWH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EWH from S2C, [Save to disk] Re-refined 3ewh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EWH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EWH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EWH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ewh_A] [3ewh] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 3EWH: [TyrKc ] by SMART

Other resources with information on 3EWH

Community annotation for 3EWH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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