3EXM Hydrolase date Oct 16, 2008
title Crystal Structure Of The Phosphatase Sc4828 With The Non-Hyd Nucleotide Gpcp
authors A.U.Singer, X.Xu, H.Zheng, A.Joachimiak, A.M.Edwards, A.Savchenko A.F.Yakunin, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Phosphatase Sc4828
Chain: A
Ec: 3.6.1.6
Engineered: Yes
 Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
Strain: A3(2) M145
Atcc: Baa-471
Gene: Sco5041, Sck7.14, Sck7.14c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tvlic
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.941 79.706 82.507 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CA, GOL, GP2, NA enzyme Hydrolase E.C.3.6.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3exm.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3EXM
  • CSU: Contacts of Structural Units for 3EXM
  • Likely Quarternary Molecular Structure file(s) for 3EXM
  • Structure Factors (418 Kb)
  • Retrieve 3EXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EXM from S2C, [Save to disk]
  • Re-refined 3exm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EXM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3exm] [3exm_A]
  • SWISS-PROT database: [Q9FBN7]
  • Domain organization of [Q9FBN7_STRCO] by SWISSPFAM
    • Other resources with information on 3EXM
  • Community annotation for 3EXM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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