3EYF Crystal structure of anti-human cytomegalovirus antibody 8f9 plus gB peptide date
authors Thomson, C.A., Bryson, S., McLean, G.R., Creagh, A.L., Pai, E.F., Schrader, J.W.
compound source
symmetry
R_factor
R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GOL, NH2 enzyme
Primary referenceGermline V-genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus., Thomson CA, Bryson S, McLean GR, Creagh AL, Pai EF, Schrader JW, EMBO J. 2008 Oct 8;27(19):2592-602. Epub 2008 Sep 4. PMID:18772881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3eyf.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3eyf.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3EYF
  • CSU: Contacts of Structural Units for 3EYF
  • Likely Quarternary Molecular Structure file(s) for 3EYF
  • Structure Factors (569 Kb)
  • Retrieve 3EYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EYF from S2C, [Save to disk]
  • Re-refined 3eyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EYF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EYF, from MSDmotif at EBI
  • Fold representative 3eyf from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eyf_A] [3eyf_E] [3eyf_D] [3eyf_B] [3eyf_C] [3eyf_F] [3eyf]
  • SWISS-PROT database: [P13201] [P01857] [P01834]
  • Domain organization of [GB_HCMVT] [IGHG1_HUMAN] [IGKC_HUMAN] by SWISSPFAM
  • Domains found in 3EYF: [IG_like] [IGv ] by SMART
    • Other resources with information on 3EYF
  • Community annotation for 3EYF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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