3EYM Viral Protein date Oct 21, 2008
title Structure Of Influenza Haemagglutinin In Complex With An Inh Membrane Fusion
authors R.J.Russell, P.S.Kerry, D.A.Stevens, D.A.Steinhauer, S.R.Martin, S.J.Gamblin, J.J.Skehel
compound source
Molecule: Hemagglutinin Ha1 Chain
Chain: A, C, E
 Organism_scientific: Influenza A Virus
Organism_taxid: 11320

Molecule: Hemagglutinin Ha2 Chain
Chain: B, D, F
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
symmetry Space Group: P 41
R_factor 0.197 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.465 160.464 176.548 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand EYK enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceStructure of influenza hemagglutinin in complex with an inhibitor of membrane fusion., Russell RJ, Kerry PS, Stevens DJ, Steinhauer DA, Martin SR, Gamblin SJ, Skehel JJ, Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17736-41. Epub 2008 Nov 12. PMID:19004788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (3eym.pdb1.gz) 229 Kb
  • LPC: Ligand-Protein Contacts for 3EYM
  • CSU: Contacts of Structural Units for 3EYM
  • Likely Quarternary Molecular Structure file(s) for 3EYM
  • Structure Factors (1022 Kb)
  • Retrieve 3EYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EYM from S2C, [Save to disk]
  • Re-refined 3eym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EYM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eym_E] [3eym_F] [3eym_A] [3eym_B] [3eym] [3eym_D] [3eym_C]
  • SWISS-PROT database: [P03437]
  • Domain organization of [HEMA_I68A0] by SWISSPFAM
    • Other resources with information on 3EYM
  • Community annotation for 3EYM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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