3F2K Transferase date Oct 29, 2008
title Structure Of The Transposase Domain Of Human Histone-Lysine Methyltransferase Setmar
authors M.F.Amaya, L.Dombrovski, S.Ni, C.Bountra, J.Weigelt, C.H.Arrowsmi A.M.Edwards, A.Botchkarev, J.Min, A.N.Plotnikov, H.Wu, Structura Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setmar
Chain: A, B
Fragment: Transposase Domain
Synonym: Set Domain And Mariner Transposase Fusion Gene-Con Protein, Metnase, Hsmar1;
Ec: 2.1.1.43
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setmar
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lyfa Peptide
Chain: C
Engineered: Yes
Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.205 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.826 46.521 61.748 90.00 92.04 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand MG, MSE enzyme Transferase E.C.2.1.1.43 BRENDA
note 3F2K is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3f2k.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3f2k.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3F2K
  • CSU: Contacts of Structural Units for 3F2K
  • Likely Quarternary Molecular Structure file(s) for 3F2K
  • Structure Factors (254 Kb)
  • Retrieve 3F2K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F2K from S2C, [Save to disk]
  • Re-refined 3f2k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F2K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F2K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F2K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f2k_A] [3f2k] [3f2k_C] [3f2k_B]
  • SWISS-PROT database: [Q53H47]
  • Domain organization of [SETMR_HUMAN] by SWISSPFAM
    • Other resources with information on 3F2K
  • Community annotation for 3F2K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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