3F5C	Transcription	date	Nov 03, 2008
title	Structure Of Dax-1:Lrh-1 Complex
authors	R.J.Fletterick, E.P.Sablin
compound		source
Molecule: Nuclear Receptor Subfamily 5 Group A Member 2 Chain: A Fragment: Unp Residues 313-560 Synonym: Liver Receptor Homolog 1, Lrh-1 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Nr5a2, Lrh1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pacycduet-1
Molecule: Nuclear Receptor Subfamily 0 Group B Member 1 Chain: B, C Fragment: Unp Residues 205-472 Synonym: Nuclear Receptor Dax-1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Nr0b1, Ahch, Dax1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet-1
symmetry	Space Group: P 43	R_factor 0.222 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.355 103.355 117.455 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
note	3F5C is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of corepressor Dax-1 bound to its target nuclear receptor LRH-1., Sablin EP, Woods A, Krylova IN, Hwang P, Ingraham HA, Fletterick RJ, Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18390-5. Epub 2008 Nov 17. PMID:19015525

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk] Biological Unit Coordinates (3f5c.pdb1.gz) 212 Kb CSU: Contacts of Structural Units for 3F5C Structure Factors (328 Kb) Retrieve 3F5C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F5C from S2C, [Save to disk] Re-refined 3f5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F5C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F5C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F5C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f5c_A] [3f5c_C] [3f5c] [3f5c_B] SWISS-PROT database: [Q61066] [P45448] Domain organization of [NR0B1_MOUSE] [NR5A2_MOUSE] by SWISSPFAM Domain found in 3F5C: [HOLI ] by SMART

Other resources with information on 3F5C

Community annotation for 3F5C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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