3F5E Cell Adhesion date Nov 03, 2008
title Crystal Structure Of Toxoplasma Gondii Micronemal Protein 1 2'F-3'Sialacnac1-3
authors J.A.Garnett, Y.Liu, T.Feizi, S.J.Matthews
compound source
Molecule: Micronemal Protein 1
Chain: A
Fragment: N-Terminal Domain: Residues 17-262
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 383379
Strain: Rh
Gene: Mic1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 43 21 2
R_factor 0.165 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.325 66.325 172.091 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 2FG, ACT, CL, GOL, MSE, NAG, SIA enzyme
Primary referenceAtomic resolution insight into host cell recognition by Toxoplasma gondii., Blumenschein TM, Friedrich N, Childs RA, Saouros S, Carpenter EP, Campanero-Rhodes MA, Simpson P, Chai W, Koutroukides T, Blackman MJ, Feizi T, Soldati-Favre D, Matthews S, EMBO J. 2007 Jun 6;26(11):2808-20. Epub 2007 May 10. PMID:17491595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3f5e.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3F5E
  • CSU: Contacts of Structural Units for 3F5E
  • Likely Quarternary Molecular Structure file(s) for 3F5E
  • Structure Factors (356 Kb)
  • Retrieve 3F5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F5E from S2C, [Save to disk]
  • Re-refined 3f5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F5E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F5E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f5e_A] [3f5e]
  • SWISS-PROT database: [O00834]
  • Domain organization of [MIC1_TOXGO] by SWISSPFAM
  • Other resources with information on 3F5E
  • Community annotation for 3F5E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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