3F5J	Hydrolase	date	Nov 03, 2008
title	Semi-Active E176q Mutant Of Rice Bglu1, A Plant Exoglucanase Glucosidase
authors	W.Chuenchor, J.R.Ketudat Cairns, S.Pengthaisong, R.C.Robinson, J.Yuvaniyama, C.J.Chen
compound		source
Molecule: Beta-Glucosidase Chain: A, B Fragment: Unp Residues 29-504 Ec: 3.2.1.21 Engineered: Yes Mutation: Yes		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Strain: Orion Gene: Os3bglu7 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a+
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.731 100.843 127.472 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	BGC, MES, SO4, ZN	enzyme	Hydrolase E.C.3.2.1.21 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structural basis of oligosaccharide binding by rice BGlu1 beta-glucosidase., Chuenchor W, Pengthaisong S, Robinson RC, Yuvaniyama J, Svasti J, Cairns JR, J Struct Biol. 2011 Jan;173(1):169-79. Epub 2010 Sep 25. PMID:20884352

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (3f5j.pdb1.gz) 84 Kb Biological Unit Coordinates (3f5j.pdb2.gz) 83 Kb Biological Unit Coordinates (3f5j.pdb3.gz) 165 Kb LPC: Ligand-Protein Contacts for 3F5J CSU: Contacts of Structural Units for 3F5J Structure Factors (1133 Kb) Retrieve 3F5J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F5J from S2C, [Save to disk] Re-refined 3f5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F5J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F5J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F5J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f5j] [3f5j_A] [3f5j_B] SWISS-PROT database: [Q75I93] Domain organization of [BGL07_ORYSJ] by SWISSPFAM

Other resources with information on 3F5J

Community annotation for 3F5J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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