3F5P	Transferase	date	Nov 04, 2008
title	Complex Structure Of Insulin-Like Growth Factor Receptor And Cyanoquinoline Inhibitor
authors	W.Xu, L.M.Miller, S.C.Mayer, D.M.Berger, D.H.Boschelli, F.Boschel
compound		source
Molecule: Insulin-Like Growth Factor 1 Receptor Chain: A, B, C, D, E, F, G, H, I, J, K, M, L, R, S, T Fragment: Igf-1r Kinase Domain, Unp Residues 981-1286 Synonym: Insulin-Like Growth Factor I Receptor, Igf-I Recep Antigen; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Igf1r Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell: Cancer Cell
symmetry	Space Group: P 1 21 1	R_factor 0.210 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.340 137.020 178.990 90.00 110.36 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	741, PTR BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component S, F, A, J, T, K, E, B, H, M, C, D, R, I, G, L
Primary reference	Lead identification to generate 3-cyanoquinoline inhibitors of insulin-like growth factor receptor (IGF-1R) for potential use in cancer treatment., Miller LM, Mayer SC, Berger DM, Boschelli DH, Boschelli F, Di L, Du X, Dutia M, Floyd MB, Johnson M, Kenny CH, Krishnamurthy G, Moy F, Petusky S, Tkach D, Torres N, Wu B, Xu W, Bioorg Med Chem Lett. 2009 Jan 1;19(1):62-6. Epub 2008 Nov 17. PMID:19041240

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (787 Kb) [Save to disk] Biological Unit Coordinates (3f5p.pdb1.gz) 59 Kb Biological Unit Coordinates (3f5p.pdb2.gz) 59 Kb Biological Unit Coordinates (3f5p.pdb3.gz) 59 Kb Biological Unit Coordinates (3f5p.pdb4.gz) 58 Kb Biological Unit Coordinates (3f5p.pdb5.gz) 58 Kb Biological Unit Coordinates (3f5p.pdb6.gz) 58 Kb Biological Unit Coordinates (3f5p.pdb7.gz) 59 Kb Biological Unit Coordinates (3f5p.pdb8.gz) 58 Kb Biological Unit Coordinates (3f5p.pdb9.gz) 58 Kb LPC: Ligand-Protein Contacts for 3F5P CSU: Contacts of Structural Units for 3F5P Likely Quarternary Molecular Structure file(s) for 3F5P Structure Factors (799 Kb) Retrieve 3F5P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F5P from S2C, [Save to disk] Re-refined 3f5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F5P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F5P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F5P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f5p_J] [3f5p_F] [3f5p_B] [3f5p_T] [3f5p_E] [3f5p_S] [3f5p_C] [3f5p_A] [3f5p_L] [3f5p_H] [3f5p_G] [3f5p_I] [3f5p_K] [3f5p_R] [3f5p_D] [3f5p] [3f5p_M] SWISS-PROT database: [P08069] Domain organization of [IGF1R_HUMAN] by SWISSPFAM Domain found in 3F5P: [TyrKc ] by SMART

Other resources with information on 3F5P

Community annotation for 3F5P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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