3F5R Transcription Regulator date Nov 04, 2008
title The Crystal Structure Of A Subunit Of The Heterodimeric Fact (Spt16p-Pob3p).
authors K.Tan, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Fact Complex Subunit Pob3
Chain: A
Synonym: Facilitates Chromatin Transcription Complex Subuni Subunit Of The Heterodimeric Fact Complex (Spt16p-Pob3p);
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Pob3, Saccharomyces Cerevisiae, Yml069w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv Lic
symmetry Space Group: P 32 2 1
R_factor 0.181 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.268 68.268 67.763 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, FMT, GOL, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3f5r.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3F5R
  • CSU: Contacts of Structural Units for 3F5R
  • Likely Quarternary Molecular Structure file(s) for 3F5R
  • Structure Factors (284 Kb)
  • Retrieve 3F5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F5R from S2C, [Save to disk]
  • Re-refined 3f5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F5R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F5R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f5r_A] [3f5r]
  • SWISS-PROT database: [Q04636]
  • Domain organization of [POB3_YEAST] by SWISSPFAM
    • Other resources with information on 3F5R
  • Community annotation for 3F5R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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