3F68 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 91U, NA, TYS BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceThink twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin., Baum B, Muley L, Heine A, Smolinski M, Hangauer D, Klebe G, J Mol Biol. 2009 Aug 21;391(3):552-64. Epub 2009 Jun 9. PMID:19520086
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3f68.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3F68
  • CSU: Contacts of Structural Units for 3F68
  • Structure Factors (281 Kb)
  • Retrieve 3F68 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F68 from S2C, [Save to disk]
  • Re-refined 3f68 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F68 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F68
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F68, from MSDmotif at EBI
  • Fold representative 3f68 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f68] [3f68_H] [3f68_I] [3f68_L]
  • SWISS-PROT database: [P09945] [P00734]
  • Domain organization of [HIRV2_HIRME] [THRB_HUMAN] by SWISSPFAM
  • Domain found in 3F68: [Tryp_SPc ] by SMART
  • Other resources with information on 3F68
  • Community annotation for 3F68 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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