3F81 Hydrolase date Nov 11, 2008
title Interaction Of Vhr With Sa3
authors S.Wu, T.Mutelin, L.Tautz
compound source
Molecule: Dual Specificity Protein Phosphatase 3
Chain: A, B
Fragment: Unp Residues 3-185
Synonym: Dual Specificity Protein Phosphatase Vhr
Ec: 3.1.3.48, 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp3, Vhr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.406 59.186 60.656 90.00 98.36 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand STT enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMultidentate small-molecule inhibitors of vaccinia H1-related (VHR) phosphatase decrease proliferation of cervix cancer cells., Wu S, Vossius S, Rahmouni S, Miletic AV, Vang T, Vazquez-Rodriguez J, Cerignoli F, Arimura Y, Williams S, Hayes T, Moutschen M, Vasile S, Pellecchia M, Mustelin T, Tautz L, J Med Chem. 2009 Nov 12;52(21):6716-23. PMID:19888758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3f81.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3f81.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3F81
  • CSU: Contacts of Structural Units for 3F81
  • Structure Factors (376 Kb)
  • Retrieve 3F81 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F81 from S2C, [Save to disk]
  • Re-refined 3f81 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F81 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F81
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F81, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f81] [3f81_B] [3f81_A]
  • SWISS-PROT database: [P51452]
  • Domain organization of [DUS3_HUMAN] by SWISSPFAM
  • Domain found in 3F81: [DSPc ] by SMART
  • Other resources with information on 3F81
  • Community annotation for 3F81 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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