3F82 Transferase date Nov 11, 2008
title Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With N- (4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4- Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3- Carboxamide
authors J.Sack
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Residues 1049-1360
Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor, Hgfsf Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pachlt-A
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.670 46.883 157.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 353 BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of N-(4-(2-Amino-3-chloropyridin-4-yloxy)-3-fluorophenyl)-4-ethoxy-1-(4-fluor ophenyl)-2-oxo-1,2-dihydropyridine-3-carboxamide (BMS-777607), a Selective and Orally Efficacious Inhibitor of the Met Kinase Superfamily., Schroeder GM, An Y, Cai ZW, Chen XT, Clark C, Cornelius LA, Dai J, Gullo-Brown J, Gupta A, Henley B, Hunt JT, Jeyaseelan R, Kamath A, Kim K, Lippy J, Lombardo LJ, Manne V, Oppenheimer S, Sack JS, Schmidt RJ, Shen G, Stefanski K, Tokarski JS, Trainor GL, Wautlet BS, Wei D, Williams DK, Zhang Y, Zhang Y, Fargnoli J, Borzilleri RM, J Med Chem. 2009 Mar 12;52(5):1251-4. PMID:19260711
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3f82.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3F82
  • CSU: Contacts of Structural Units for 3F82
  • Likely Quarternary Molecular Structure file(s) for 3F82
  • Structure Factors (87 Kb)
  • Retrieve 3F82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F82 from S2C, [Save to disk]
  • Re-refined 3f82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F82
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F82, from MSDmotif at EBI
  • Fold representative 3f82 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f82_A] [3f82]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 3F82: [TyrKc ] by SMART
  • Other resources with information on 3F82
  • Community annotation for 3F82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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