3F8J	Ligase Dna	date	Nov 12, 2008
title	Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg, Cryst Structure In Space Group C222(1)
authors	H.Hashimoto, J.R.Horton, X.Zhang, X.Cheng
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: B Fragment: Ydg Domain: Unp Residues 417-628 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Uhrf1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pxc675
Molecule: 5'-D(Dcpdcpdapdtpdgp(5cm)Pdgpdcpdtpdgp 3'; Chain: F Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna Oligo
Molecule: 5'-D(Dgpdtpdcpdapdgpdcpdgpdcpdapdtpdgp Chain: G Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna Oligo
symmetry	Space Group: C 2 2 21	R_factor 0.198 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.670 91.590 118.510 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	5CM, GOL	enzyme
Primary reference	UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications., Hashimoto H, Horton JR, Zhang X, Cheng X, Epigenetics. 2009 Jan 10;4(1). PMID:19077538

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3f8j.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3F8J CSU: Contacts of Structural Units for 3F8J Likely Quarternary Molecular Structure file(s) for 3F8J Structure Factors (342 Kb) Retrieve 3F8J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F8J from S2C, [Save to disk] Re-refined 3f8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F8J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F8J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F8J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f8j] [3f8j_G] [3f8j_F] [3f8j_B] SWISS-PROT database: [Q8VDF2] Domain organization of [UHRF1_MOUSE] by SWISSPFAM Domain found in 3F8J: [SRA ] by SMART

Other resources with information on 3F8J

Community annotation for 3F8J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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