3F8S	Hydrolase	date	Nov 13, 2008
title	Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With
authors	M.J.Ammirati, S.Liu, D.W.Piotrowski
compound		source
Molecule: Dipeptidyl Peptidase 4 Chain: A, B Fragment: Unp Residues 31-766 Synonym: Dipeptidyl Peptidase Iv, Dpp Iv, T-Cell Activation Cd26, Tp103, Adenosine Deaminase Complexing Protein 2, Adab Ec: 3.4.14.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Dpp4, Adcp2, Cd26 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pbac2
symmetry	Space Group: P 21 21 21	R_factor 0.243 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.429 67.141 421.529 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.43 Å
ligand	NAG, PF2 BindingDB	enzyme	Hydrolase E.C.3.4.14.5 BRENDA
Gene Ontology	Chain Function Process Component A, B virus receptor activity chemorepellent activity
Primary reference	(3,3-Difluoro-pyrrolidin-1-yl)-[(2S,4S)-(4-(4-pyrimidin-2-yl-piperazin-1-y l)-pyrrolidin-2-yl]-methanone: a potent, selective, orally active dipeptidyl peptidase IV inhibitor., Ammirati MJ, Andrews KM, Boyer DD, Brodeur AM, Danley DE, Doran SD, Hulin B, Liu S, McPherson RK, Orena SJ, Parker JC, Polivkova J, Qiu X, Soglia CB, Treadway JL, VanVolkenburg MA, Wilder DC, Piotrowski DW, Bioorg Med Chem Lett. 2009 Apr 1;19(7):1991-5. Epub 2009 Feb 13. PMID:19275964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk] Biological Unit Coordinates (3f8s.pdb1.gz) 120 Kb Biological Unit Coordinates (3f8s.pdb2.gz) 121 Kb Biological Unit Coordinates (3f8s.pdb3.gz) 236 Kb LPC: Ligand-Protein Contacts for 3F8S CSU: Contacts of Structural Units for 3F8S Likely Quarternary Molecular Structure file(s) for 3F8S Structure Factors (621 Kb) Retrieve 3F8S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F8S from S2C, [Save to disk] Re-refined 3f8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F8S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F8S

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F8S, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f8s_A] [3f8s] [3f8s_B] SWISS-PROT database: [P27487] Domain organization of [DPP4_HUMAN] by SWISSPFAM

Other resources with information on 3F8S

Community annotation for 3F8S at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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