3F9D Transport Protein date Nov 13, 2008
title Crystal Structure Of The R132k:R111l:T54e Mutant Of Cellular Retinoic Acid-Binding Protein II Complexed With C15- Aldehyde (A Retinal Analog) At 2.00 Angstrom Resolution
authors X.Jia, J.H.Geiger
compound source
Molecule: Cellular Retinoic Acid-Binding Protein 2
Chain: A, B
Synonym: Cellular Retinoic Acid-Binding Protein II, Crabp- II;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crabp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Crabpii-Pet17b-Kle-R59w
symmetry Space Group: P 61 2 2
R_factor 0.195 R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
87.499 87.499 210.990 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand LSR enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3f9d.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3f9d.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3F9D
  • CSU: Contacts of Structural Units for 3F9D
  • Structure Factors (465 Kb)
  • Retrieve 3F9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F9D from S2C, [Save to disk]
  • Re-refined 3f9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F9D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F9D, from MSDmotif at EBI
  • Fold representative 3f9d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f9d_B] [3f9d_A] [3f9d]
  • SWISS-PROT database: [P29373]
  • Domain organization of [RABP2_HUMAN] by SWISSPFAM
  • Other resources with information on 3F9D
  • Community annotation for 3F9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science