3FBC	Transferase	date	Nov 19, 2008
title	Crystal Structure Of The Mimivirus Ndk N62l-R107g Double Mut Complexed With Dtdp
authors	S.Jeudy, A.Lartigue, J.M.Claverie, C.Abergel
compound		source
Molecule: Nucleoside Diphosphate Kinase Chain: A, B, C, D, E, F Synonym: Ndp Kinase, Ndk Ec: 2.7.4.6 Engineered: Yes Mutation: Yes		Organism_scientific: Acanthamoeba Polyphaga Mimivirus Organism_taxid: 212035 Gene: Mimi_r418, Ndk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdigs02
symmetry	Space Group: C 2 2 21	R_factor 0.189 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.387 153.337 185.384 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	MG, PO4, TYD	enzyme	Transferase E.C.2.7.4.6 BRENDA
Gene	MIMI
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Dissecting the unique nucleotide specificity of Mimivirus nucleoside diphosphate kinase., Jeudy S, Lartigue A, Claverie JM, Abergel C, J Virol. 2009 May 13. PMID:19439473

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (3fbc.pdb1.gz) 131 Kb Biological Unit Coordinates (3fbc.pdb2.gz) 130 Kb LPC: Ligand-Protein Contacts for 3FBC CSU: Contacts of Structural Units for 3FBC Structure Factors (341 Kb) Retrieve 3FBC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FBC from S2C, [Save to disk] Re-refined 3fbc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3FBC

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FBC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fbc_A] [3fbc_E] [3fbc_F] [3fbc_B] [3fbc_D] [3fbc_C] [3fbc] SWISS-PROT database: [Q5UQL3] Domain organization of [NDK_MIMIV] by SWISSPFAM Domain found in 3FBC: [NDK ] by SMART

Other resources with information on 3FBC

Community annotation for 3FBC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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