3FDR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 3FDR is a representative structure
Primary referenceMouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi., Chen C, Jin J, James DA, Adams-Cioaba MA, Park JG, Guo Y, Tenaglia E, Xu C, Gish G, Min J, Pawson T, Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20336-41. Epub 2009 Nov 16. PMID:19918066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (3fdr.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 3FDR
  • Likely Quarternary Molecular Structure file(s) for 3FDR
  • Structure Factors (57 Kb)
  • Retrieve 3FDR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FDR from S2C, [Save to disk]
  • Re-refined 3fdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fdr] [3fdr_A]
  • SWISS-PROT database: [Q9Y2W6]
  • Domain found in 3FDR: [TUDOR ] by SMART

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