3FG7 Structural Protein date Dec 05, 2008
title The Crystal Structure Of Villin Domain 6
authors H.Wang, L.D.Burtnick, R.C.Robinson
compound source
Molecule: Villin-1
Chain: A, B
Fragment: Gelsolin-Like Repeats 4, 5, And 6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Man
Organism_taxid: 9606
Gene: Vil, Vil1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psy5
symmetry Space Group: P 31
R_factor 0.197 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.820 47.820 98.173 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHelix straightening as an activation mechanism in the gelsolin superfamily of actin regulatory proteins., Wang H, Chumnarnsilpa S, Loonchanta A, Li Q, Kuan YM, Robine S, Larsson M, Mihalek I, Burtnick LD, Robinson RC, J Biol Chem. 2009 Aug 7;284(32):21265-9. Epub 2009 Jun 1. PMID:19491107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3fg7.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3fg7.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3FG7
  • Likely Quarternary Molecular Structure file(s) for 3FG7
  • Structure Factors (113 Kb)
  • Retrieve 3FG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FG7 from S2C, [Save to disk]
  • Re-refined 3fg7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FG7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FG7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fg7] [3fg7_A] [3fg7_B]
  • SWISS-PROT database: [P09327]
  • Domain organization of [VILI_HUMAN] by SWISSPFAM
  • Domain found in 3FG7: [GEL ] by SMART
    • Other resources with information on 3FG7
  • Community annotation for 3FG7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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