3FH4 Hydrolase date Dec 08, 2008
title Crystal Structure Of Recombinant Vibrio Proteolyticus Aminop
authors W.Yong, J.J.P.Kim, M.Hartley, B.Bennett
compound source
Molecule: Bacterial Leucyl Aminopeptidase
Chain: A
Ec: 3.4.11.10
Engineered: Yes
Organism_scientific: Vibrio Proteolyticus
Organism_taxid: 671
Strain: Ifo13287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector: Pet26b(+)
symmetry Space Group: P 61 2 2
R_factor 0.191 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.397 108.397 93.529 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand NA, TRS, ZN enzyme Hydrolase E.C.3.4.11.10 BRENDA
Primary referenceHeterologous expression and purification of Vibrio proteolyticus (Aeromonas proteolytica) aminopeptidase: a rapid protocol., Hartley M, Bennett B, Protein Expr Purif. 2009 Jul;66(1):91-101. Epub 2009 Feb 20. PMID:19233285
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3fh4.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3FH4
  • CSU: Contacts of Structural Units for 3FH4
  • Structure Factors (366 Kb)
  • Retrieve 3FH4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FH4 from S2C, [Save to disk]
  • Re-refined 3fh4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FH4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FH4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FH4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fh4] [3fh4_A]
  • SWISS-PROT database: [Q01693]
  • Domain organization of [AMPX_VIBPR] by SWISSPFAM
  • Other resources with information on 3FH4
  • Community annotation for 3FH4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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